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Friday 6 October 2017

Phylogenetic and chemotaxonomic resolution of the genus Annulohypoxylon (Xylariaceae) including four new species

Author
  • Eric Kuhnert
  • Esteban B. Sir
  • Christopher Lambert
  • Kevin D. Hyde
  • Adriana I. Hladki
  • Andrea I. Romero
  • Manfred Rohde
  • Marc Stadler
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Article

Abstract

This study deals with an extensive evaluation focusing on phylogenetic and chemotaxonomic infrageneric relationships of the genus Annulohypoxylon (Xylariaceae, Ascomycota), whose species are ubiquitously associated with seed plants as endophytes and saprotrophs in all forested areas of the world. Using evidence from phylogenetic, chemotaxonomic and morphological data, various varieties within the genus are raised to species level, leading to the new combinations for A. areolatum (≡ A. bovei var. microsporum), A. macrosporum (≡ A. leptascum var. macrosporum), and A. microdiscum (≡ A. moriforme var. microdiscum). Annulohypoxylon substygium nom. nov. is applied for A. stygium var. annulatum and the four new tropical and subtropical species A. massivumA. violaceopigmentumA. viridistratum and A. yungensis are introduced. Furthermore, A. leucadendri is excluded from the genus as its morphological characters disagree with the generic concept, the recently erected A. palmicola is synonymized with A. leptascum and A. austrobahiense has been reassigned to the genus Hypoxylon. In addition, the key taxa A. annulatum and A. truncatum have been reinvestigated and epitypes have been defined. For the first time, a dichotomous key to the genus is provided. A phylogenetic β-tubulin tree in conjunction with stromatal HPLC profiles clearly shows that Annulohypoxylon comprises two distinct lineages. The A. cohaerens/multiforme group might eventually warrant segregation into a new genus as further molecular data become available.

References

  1. Ariyawansa HA, Hawksworth DL, Hyde KD et al (2014) Epitypification and neotypification: guidelines with appropriate and inappropriate examples. Fungal Divers 69:57–91CrossRefGoogle Scholar
  2. Ariyawansa HA, Hyde KD, Jayasiri SC et al (2015) Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa. Fungal Divers 75:27–274CrossRefGoogle Scholar
  3. Bills GF, González-Menéndez V, Martín J, Platas G, Fournier J, Peršoh D, Stadler M (2012) Hypoxylon pulicicidum sp. nov. (Ascomycota, Xylariales), a Pantropical Insecticide-Producing Endophyte. PLoS ONE 7:e46687CrossRefPubMedPubMedCentralGoogle Scholar
  4. Bitzer J, Köpcke B, Stadler M, Hellwig V, Ju YM, Seip S, Henkel T (2007) Accelerated dereplication of natural products, supported by reference libraries. Chimia 51:332–338CrossRefGoogle Scholar
  5. Bitzer J, Læssøe T, Fournier J, Kummer V, Decock C, Tichy HV, Piepenbring M, Peršoh D, Stadler M (2008) Affinities of Phylacia and the daldinoid Xylariaceae, inferred from chemotypes of cultures and ribosomal DNA sequences. Mycol Res 112:251–270CrossRefPubMedGoogle Scholar
  6. Cha J, Heo B, Ahn SJ, Gang G, Park CG, Kwak YS (2012) Morphological and molecular characteristics of the oak tree canker pathogen, Annulohypoxylon truncatum. Mycobiology 40:79–81CrossRefPubMedPubMedCentralGoogle Scholar
  7. Chowdhary K, Kaushik N (2015) Fungal endophyte diversity and bioactivity in the Indian medicinal plant Ocimum sanctum Linn. PLoS ONE 10:e0141444CrossRefPubMedPubMedCentralGoogle Scholar
  8. Daranagama DA, Camporesi E, Tian Q, Liu X, Chamyuang S, Stadler M, Hyde KD (2015a) Anthostomella is polyphyletic comprising several genera in Xylariaceae. Fungal Divers 73:203–238CrossRefGoogle Scholar
  9. Daranagama DA, Liu X, Chamyuang S, Stadler M, Bahkali AH, Hyde KD (2015b) Rhopalostroma brevistipitatum sp. nov. from Thailand with an extended generic description for Rhopalostroma. Phytotaxa 227:229–242CrossRefGoogle Scholar
  10. de Souza Leite T, Cnossen-Fassoni A, Pereira OL, Mizubuti ESG, de Araújo EF, de Queiroz MV (2013) Novel and highly diverse fungal endophytes in soybean revealed by the consortium of two different techniques. J Microbiol 51:56–69CrossRefPubMedGoogle Scholar
  11. Fournier J, Lechat C (2016) Some Annulohypoxylon spp. (Xylariaceae) from French Guiana, including three new species. Ascomycete.org 8:33–53Google Scholar
  12. Fournier J, Köpcke B, Stadler M (2010a) New species of Hypoxylon from western Europe and Ethiopia. Mycotaxon 113:209–235CrossRefGoogle Scholar
  13. Fournier J, Stadler M, Hyde KD, Duong ML (2010b) The new genus Rostrohypoxylon and two new Annulohypoxylon species from Northern Thailand. Fungal Divers 40:23–36CrossRefGoogle Scholar
  14. Fukai M, Tsukada M, Miki K, Suzuki T, Sugita T, Kinoshita K, Takahashi K, Shiro M, Koyama K (2012) Hypoxylonols C–F, benzo[j]fluoranthenes from Hypoxylon truncatum. J Nat Prod 75:22–25CrossRefPubMedGoogle Scholar
  15. Hladki AI, Romero AI (2009) Taxonomic and nomenclatural aspects of Hypoxylon taxa from southern South America proposed by Spegazzini. Mycologia 101:733–744CrossRefPubMedGoogle Scholar
  16. Hsieh HM, Ju YM, Rogers JD (2005) Molecular phylogeny of Hypoxylon and closely related genera. Mycologia 97:844–865CrossRefPubMedGoogle Scholar
  17. Ikeda A, Matsuoka S, Masuya H, Mori AS, Hirose D, Osono T (2014) Comparison of the diversity, composition, and host recurrence of xylariaceous endophytes in subtropical, cool temperate, and subboreal regions in Japan. Popul Ecol 56:289–300Google Scholar
  18. Jaklitsch WM, Gardiennet A, Voglmayr H (2015) Resolution of morphology-based taxonomic delusions: AcrocordiellaBasiseptosporaBlogiascosporaClypeosphaeriaHymenopleellaLepteutypaPseudapiosporaRequienellaSeiridium and Strickeria. Persoonia 37:82–105CrossRefGoogle Scholar
  19. Jayasiri SC, Hyde KD, Ariyawansa HA et al (2015) The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. Fungal Divers 74:3–18CrossRefGoogle Scholar
  20. Ju YM, Rogers JD (1996) A revision of the genus Hypoxylon. Mycologia Memoir No. 20. APS Press, St. PaulGoogle Scholar
  21. Ju YM, Rogers JD, San Martín F, Granmo A (1998) The genus Biscogniauxia. Mycotaxon 66:1–98Google Scholar
  22. Koyama K, Kuramochi D, Kinoshita K, Takahashi K (2002) Hypoxylonols A and B, novel reduced benzo[j]fluoranthene derivatives from the mushroom Hypoxylon truncatum. J Nat Prod 65:1489–1490CrossRefPubMedGoogle Scholar
  23. Kuhnert E, Fournier J, Peršoh D, Luangsa-ard JJ, Stadler M (2014a) New Hypoxylon species from Martinique and new evidence on the molecular phylogeny of Hypoxylon based on ITS rDNA and β-tubulin data. Fungal Divers 64:181–203CrossRefGoogle Scholar
  24. Kuhnert E, Heitkämper S, Fournier J, Surup F, Stadler M (2014b) Hypoxyvermelhotins A–C, new pigments from Hypoxylon lechatii sp. nov. Fungal Biol 118:242–252CrossRefPubMedGoogle Scholar
  25. Kuhnert E, Surup F, Herrmann J, Huch V, Müller R, Stadler M (2015a) Rickenyls A-E, antioxidative terphenyls from the fungus Hypoxylon rickii (Xylariaceae, Ascomycota). Phytochemistry 118:68–73CrossRefPubMedGoogle Scholar
  26. Kuhnert E, Surup F, Wiebach V, Bernecker S, Stadler M (2015b) Botryane, noreudesmane and abietane terpenoids from the ascomycete Hypoxylon rickii. Phytochemistry 117:116–122CrossRefPubMedGoogle Scholar
  27. Læssøe T, Rogers JD, Whalley AJS (1989) Camillea, Jongiella and light-spored species of Hypoxylon. Mycol Res 93:121–155CrossRefGoogle Scholar
  28. Li GJ, Hyde KD, Zhao RL, Hongsanan S, Abdel-Aziz FA, Abdel-Wahab MA, Alvarado P, Alves-Silva G, Ammirati JF, Ariyawansa HA, Baghela A, Bahkali AH, Beug M, Bhat DJ, Bojantchev D, Boonpratuang T, Bulgakov TS, Camporesi E, Boro MC, Ceska O, Chakraborty D, Chen J, Chethana KW, Chomnunti P, Consiglio G, Cui BK, Dai DQ, Dai YC, Daranagama DA, Das K, Dayarathne MC, Crop ED, De Oliveira RJV, de Souza CAF, de Souza JI, Dentinger BTM, Dissanayake AJ, Doilom M, Drechsler-Santos ER, Ghobad-Nejhad M, Gilmore SP, Góes-Neto A, Gorczak M, Haitjema CH, Hapuarachchi KK, Hashimoto A, He MQ, Henske JK, Hirayama K, Iribarren MJ, Jayasiri SC, Jayawardena RS, Jeon SJ, Jerônimo GH, Jesus AL, Jones EBG, Kang JC, Karunarathna SC, Kirk PM, Konta S, Kuhnert E, Langer E, Lee HS, Lee HB, Li WJ, Li XH, Liimatainen K, Lima DX, Lin CG, Liu JK, Liu XZ, Liu ZY, Luangsa-ard JJ, Lücking R, Lumbsch HT, Lumyong S, Leaño EM, Marano AV, Matsumura M, McKenzie EHC, Mongkolsamrit S, Mortimer PE, Nguyen TTT, Niskanen T, Norphanphoun C, O’Malley MAO, Parnmen S, Pawłowska J, Perera RH, Phookamsak R, Phukhamsakda C, Pires-Zottarelli CLA, Raspé O, Reck MA, Rocha SCO, de Santiago ALCMA, Senanayake IC, Setti L, Shang QJ, Singh SK, Sir EB, Solomon KV, Song J, Srikitikulchai P, Stadler M, Suetrong S, Takahashi H, Takahashi T, Tanaka K, Tang LP, Thambugala KM, Thanakitpipattana D, Theodorou MK, Thongbai B, Thummarukcharoen T, Tian Q, Tibpromma S, Verbeken A, Vizzini A, Vlasák J, Voigt K, Wanasinghe DN, Wang Y, Weerakoon G, Wen HA, Wen TC, Wijayawardene NN, Wongkanoun S, Wrzosek M, Xiao YP, Xu JC, Yan JY, Yang J, Yang SD, Hu Y, Zhang JF, Zhao J, Zhou LW, Peršoh D, Phillips AJL, Maharachchikumbura SSN (2016) Fungal diversity notes 253–366: taxonomic and phylogenetic contributions to fungal taxa. Fungal Divers 78:1–237CrossRefGoogle Scholar
  29. Liu JK, Hyde KD, Jones EBG et al (2015) Fungal diversity notes 1–110: taxonomic and phylogenetic contributions to fungal species. Fungal Divers 72:1–197CrossRefGoogle Scholar
  30. Maharachchikumbura SS, Hyde KD, Jones EG et al (2015) Towards a natural classification and backbone tree for Sordariomycetes. Fungal Divers 72:199–301CrossRefGoogle Scholar
  31. Maharachchikumbura SS, Hyde KD, Jones EG et al (2016) Families of Sordariomycetes. Fungal Divers 79:1–317CrossRefGoogle Scholar
  32. Marincowitz S, Crous PW, Groenewald JZ, Wingfield MJ (2008) Microfungi occurring on Proteaceae in the fynbos. CBS Biodivers Ser 7:1–166Google Scholar
  33. Peláez F, González V, Platas G, Sánchez-Ballesteros J, Rubio V (2008) Molecular phylogenetic studies within the family Xylariaceae based on ribosomal DNA sequences. Fungal Divers 31:111–134Google Scholar
  34. Pereira J, Rogers JD, Bezerra JL (2010) New Annulohypoxylon species from Brazil. Mycologia 102:248–252CrossRefPubMedGoogle Scholar
  35. Quang DN, Hashimoto T, Tanaka M, Baumgartner M, Stadler M, Asakawa Y (2002) Chemical constituents of the ascomycete Daldinia concentrica. J Nat Prod 65:1869–1874CrossRefPubMedGoogle Scholar
  36. Quang DN, Hashimoto T, Nomura Y, Wollweber H, Hellwig V, Fournier J, Stadler M, Asakawa Y (2005a) Cohaerins A and B, azaphilones from the fungus Hypoxylon cohaerens, and comparison of HPLC-based metabolite profiles in Hypoxylon sect. Annulata. Phytochemistry 66:797–809CrossRefPubMedGoogle Scholar
  37. Quang DN, Hashimoto T, Stadler M, Radulović N, Asakawa Y (2005b) Antimicrobial azaphilones from the fungus Hypoxylon multiforme. Planta Med 71:1058–1062CrossRefPubMedGoogle Scholar
  38. Quang DN, Stadler M, Fournier J, Tomita A, Hashimoto T (2006) Cohaerins C-F, four azaphilones from the xylariaceous fungus Annulohypoxylon cohaerens. Tetrahedron 62:6349–6354CrossRefGoogle Scholar
  39. Rayner RW (1970) A mycological colour chart. Kew and British Mycological Society, Commonwealth Mycological Institute, KewGoogle Scholar
  40. Rivera-Orduña FN, Suarez-Sanchez RA, Flores-Bustamante ZR, Gracida-Rodriguez JN, Flores-Cotera LB (2011) Diversity of endophytic fungi of Taxus globosa (Mexican yew). Fungal Divers 47:65–74CrossRefGoogle Scholar
  41. Robl D, dos Santos Costa P, Büchli F, da Silva Lima DJ, da Silva Delabona P, Squina FM, Pimentel IC, Padilla G, de Cruz Pradella JG (2015) Enhancing of sugar cane bagasse hydrolysis by Annulohypoxylon stygium glycohydrolases. Bioresour Technol 177:247–254CrossRefPubMedGoogle Scholar
  42. Sánchez-Ballesteros J, González V, Salazar O, Acero J, Portal MA, Julián M, Rubio V (2000) Phylogenetic study of Hypoxylon and related genera based on ribosomal ITS sequences. Mycologia 92:964–977CrossRefGoogle Scholar
  43. Schlingmann G, Luckman S, McDonald LA, Koehn FE (2011) Rare 1,2′-binaphthyls produced by Nodulisporium hinnuleum Smith (ATCC 36102). Rec Nat Prod 5:252–260Google Scholar
  44. Senanayake IC, Maharachchikumbura SS, Hyde KD et al (2015) Towards unraveling relationships in Xylariomycetidae (Sordariomycetes). Fungal Divers 73:73–144CrossRefGoogle Scholar
  45. Sir EB, Kuhnert E, Surup F, Hyde KD, Stadler M (2015) Discovery of new mitorubrin derivatives from Hypoxylon fulvo-sulphureum sp. nov. (Ascomycota, Xylariales). Mycol Progr 14:28CrossRefGoogle Scholar
  46. Sir EB, Kuhnert E, Lambert C, Hladki AI, Romero AI, Stadler M (2016) New species and reports of Hypoxylon from Argentina recognized by a polyphasic approach. Mycol Progr 15:42CrossRefGoogle Scholar
  47. Stadler M (2011) Importance of secondary metabolites in the Xylariaceae as parameters for assessment of their taxonomy, phylogeny, and functional biodiversity. Curr Res Envion Appl Mycol 1:75–133CrossRefGoogle Scholar
  48. Stadler M, Fournier J (2006) Pigment chemistry, taxonomy and phylogeny of the Hypoxyloideae (Xylariaceae). Rev Iberoam Micol 23:160–170CrossRefPubMedGoogle Scholar
  49. Stadler M, Fournier J, Læssøe T, Lechat C, Tichy HV, Piepenbring M (2008) Recognition of hypoxyloid and xylarioid Entonaema species from a comparison of holomorphic morphology, HPLC profiles, and ribosomal DNA sequences. Mycol Progr 7:53–73CrossRefGoogle Scholar
  50. Stadler M, Fournier J, Læssøe T, Decock C, Peršoh D, Rambold G (2010a) Ruwenzoria, a new genus of the Xylariaceae from Central Africa. Mycol Prog 9:169–179CrossRefGoogle Scholar
  51. Stadler M, Fournier J, Læssøe T, Chlebicki A, Lechat C, Flessa F, Rambold G, Peršoh D (2010b) Chemotaxonomic and phylogenetic studies of Thamnomyces (Xylariaceae). Mycoscience 51:189–207CrossRefGoogle Scholar
  52. Stadler M, Kuhnert E, Peršoh D, Fournier J (2013) The Xylariaceae as model example for a unified nomenclature following the “One Fungus-One Name” (1F1N) Concept. Mycology 4:5–21Google Scholar
  53. Stadler M, Hawksworth DL, Fournier J (2014a) The application of the name Xylaria hypoxylon, based on Clavaria hypoxylon of Linnaeus. IMA Fungus 5:57–66CrossRefPubMedPubMedCentralGoogle Scholar
  54. Stadler M, Læssøe T, Fournier J, Decock C, Schmieschek B, Tichy HV, Peršoh D (2014b) A polyphasic taxonomy of Daldinia (Xylariaceae). Stud Mycol 77:1–143CrossRefPubMedPubMedCentralGoogle Scholar
  55. Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690CrossRefPubMedGoogle Scholar
  56. Sudarman E, Kuhnert E, Hyde KD, Sir EB, Surup F, Stadler M (2016) Truncatones A-D, benzo[j]fluoranthenes from Annulohypoxylon spp. (Xylariaceae, Ascomycota). Tetrahedron 72:6450–6454CrossRefGoogle Scholar
  57. Surup F, Mohr KI, Jansen R, Stadler M (2013) Cohaerins G-K, azaphilone pigments from Annulohypoxylon cohaerens and absolute stereochemistry of cohaerins C-K. Phytochemistry 95:252–258CrossRefPubMedGoogle Scholar
  58. Surup F, Kuhnert E, Liscinskij E, Stadler M (2015) Silphiperfolene-type terpenoids and other metabolites from cultures of the tropical ascomycete Hypoxylon rickii (Xylariaceae). Nat Prod Bioprospect 5:167–173CrossRefPubMedPubMedCentralGoogle Scholar
  59. Surup F, Wiebach Vincent, Kuhnert E, Stadler M (2016) Truncaquinones A and B, asterriquinones from Annulohypoxylon truncatum. Tetrahedron Lett 57:2813–2815CrossRefGoogle Scholar
  60. Suwannasai N, Rodtong S, Thienhirun S, Whalley AJS (2005) New species and phylogenetic relationships of Hypoxylon species found in Thailand inferred from the internal transcribed spacer regions of ribosomal DNA sequences. Mycotaxon 94:303–324Google Scholar
  61. Triebel D, Peršoh D, Wollweber H, Stadler M (2005) Phylogenetic relationships among DaldiniaEntonaema and Hypoxylon as inferred from ITS nrDNA sequences. Nova Hedw 80:25–43CrossRefGoogle Scholar
For further details log on website :
https://link.springer.com/article/10.1007/s13225-016-0377-6

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