Blog List

Friday, 29 July 2016

Estimating the diversity of wood-decaying polypores in tropical lowland rain forests in Malaysia: the effect of sampling strategy

Published Date



Volume 24, Issue 2, pp 393-406
First online: 

Title 

Estimating the diversity of wood-decaying polypores in tropical lowland rain forests in Malaysia: the effect of sampling strategy

  • Author 
  • Satoshi Yamashita 
  • Tsutomu Hattori
  • Su See Lee
  • Kimiko Okabe

  • Abstract 

    Unlike in temperate regions, few studies have examined the effect of sampling effort on the observed number of wood-decaying polypores in the tropics. We conducted field surveys at Pasoh Forest Reserve and Lambir Hills National Park, two primary lowland dipterocarp forests in Malaysia, to compare the numbers of observed and estimated species for each site. Field surveys included five occasions over 4 years on a 2-ha plot in Pasoh, and two occasions in 1 year in 12 0.1-ha transects in Lambir. From Pasoh, 140 polypore species were recorded and 188 species were estimated (using the Chao2 estimator). From Lambir, 90 species were recorded and 149 estimated. Thus, at both sites the number of species observed comprised <75 % of the estimated number of species. At Pasoh, more than 80 % of the total species were recorded by the end of the third sampling occasion. When sampling effort (area × number of sampling occasions) was constant, more species were recorded by field surveys conducted over larger areas with less frequent sampling than those conducted over smaller areas with more frequent sampling. The numbers of species recorded in the present work were greater than those identified in temperate and boreal regions in previous studies. The species richness of wood-decaying polypores in tropical regions may be largely underestimated without conducting field surveys on at least three occasions. If potential sampling effort is limited, surveying a larger area on fewer occasions is a reasonable compromise to ensure coverage of the majority of polypore species.

    Keywords

    Fruiting body Macrofungi Sampling area Sampling effort Southeast Asia Species richness

      1. References


        1. Bässler C, Müller J, Dziock F, Brandl R (2010) Effects of resource availability and climate on the diversity of wood-decaying fungi. J Ecol 98:822–832CrossRef
        2. Berglund H, Edman M, Ericson L (2005) Temporal variation of wood-fungi diversity in boreal old-growth forests: implications for monitoring. Ecol Appl 15:970–982CrossRef

        1. Chao A (1984) Nonparametric estimation of the number of classes in a population. Scand J Stat 11:265–270
        2. Colwell RK (2006) EstimateS: statistical estimation of species richness and shared species from samples. Version 8. http://​purl.​oclc.​org/​estimates. Accessed 17 Jan 2013

        1. Corner EJH (1935) The seasonal fruiting of Agarics in Malaya. Gard Bull Singap 9:79–88
        2. Corner EJH (1983) Ad Polyporaceas I. Amauroderma and Ganoderma. Beih Nova Hedwig 75:1–182
        3. Corner EJH (1987) Ad Polyporaceas IV. The genera DaedaleaFlabellophoraFlavodonGloeophyllumHeteroporusIrpexLenzitesMicroporellusNigrofomesNigroporusOxyporusParatrichaptumRigidoporusScenidiumTrichaptumVanderbylia, and Steccherinum. Beih Nova Hedwig 86:1–265
        1. Corner EJH (1989) Ad Polyporaceas V. The genera AlbatrellusBoletopsisCoriolopsis (dimitic), CristelloporiaDiacanthodesElmerinaFomitopsis (dimitic), GloeoporusGrifolaHapalopilusHeterobasidionHydnopolyporusIschnodermaLoweporusParmastomycesPerenniporiaPyrofomesStecchericiumTrechisporaTruncospora and Tyromyces. Beih Nova Hedwig 96:1–218

        Corner EJH (1991) Ad Polyporaceas VII. The xanthochroic polypores. Beih Nova Hedwig 101:1–175
      2. Davies SJ, Noor NSM, LaFrankie JV, Ashton PS (2003) The trees of Pasoh forest: stand structure and floristic composition of the 50-ha forest research plot. In: Okuda T, Manokaran N, Matsumoto Y, Niiyama K, Thomas SC, Ashton PS (eds) Pasoh: ecology of a lowland rain forest in Southeast Asia. Springer, Tokyo, pp 35–50CrossRef
      3. Davies SJ, Tan S, LaFrankie JV, Potts MD (2005) Soil-related floristic variation in a hyperdiverse dipterocarp forest. In: Roubik DW, Sakai S, Karim AAH (eds) Pollination ecology and the rain forest; Sarawak Studies. Springer, New York, pp 22–34CrossRef
      4. Ferrer A, Gilbert GS (2003) Effect of tree host species on fungal community composition in a tropical rain forest in Panama. Divers Distrib 9:455–468CrossRef
      5. Gibertoni TB, Santos PJP, Cavalcanti MAQ (2007) Ecological aspects of Aphyllophorales in the Atlantic rain forest in northeast Brazil. Fung Divers 25:49–67
      6. Gilbert GS, Sousa WP (2002) Host specialization among wood-decay polypore fungi in a Caribbean mangrove forest. Biotropica 34:396–404CrossRef
      7. Gilbert GS, Ferrer A, Carranza J (2002) Polypore fungal diversity and host density in a moist tropical forest. Biodivers Conserv 11:947–957CrossRef
      1. Gilbert GS, Gorospe J, Ryvarden L (2008) Host and habitat preferences of polypore fungi in Micronesian tropical flooded forests. Mycol Res 112:674–680PubMedCrossRef
      2. Gilbertson RL, Ryvarden L (1986) North American polypores, vol 1. Fungiflora, Oslo, p 433
      3. Gilbertson RL, Ryvarden L (1987) North American polypores, vol 2. Fungiflora, Oslo, p 445
      4. Gjerde I, Sætersdal M, Rolstad J, Storaunet KO, Blom HH, Gundersen V, Heegaard E, Pugnaire F (2005) Productivity-diversity relationships for plants, bryophytes, lichens, and polypore fungi in six northern forest landscapes. Ecography 28:705–720CrossRef
      5. Guevara R, Dirzo R (1998) A rapid method for the assessment of the macromycota. The fungal community of an evergreen cloud forest as an example. Can J Bot 76:596–601
      6. Halme P, Kotiaho JS (2012) The importance of timing and number of surveys in fungal biodiversity research. Biodivers Conserv 21:205–219CrossRef
      7. Halme P, Kotiaho JS, Ylisirniö AL, Hottola J, Junninen K, Kouki J, Lindgren M, Mönkkönen M, Penttilä R, Renvall P, Siitonen J, Similä M (2009) Perennial polypores as indicators of annual and red-listed polypores. Ecol Indic 9:256–266CrossRef
      8. Hattori T (2000) Type studies of the polypores described by E. J. H. Corner from Asia and the West Pacific I. Mycoscience 41:339–349CrossRef
      9. Hattori T (2005) Type studies of the polypores described by E. J. H. Corner from Asia and West Pacific areas VII. Species described in Trametes (1). Mycoscience 46:303–312CrossRef
      10. Hattori T, Lee SS (2003) Community structure of wood-decaying Basidiomycetes in Pasoh. In: Okuda T, Manokaran N, Matsumoto Y, Niiyama K, Thomas SC, Ashton PS (eds) Pasoh: ecology of a lowland rain forest in Southeast Asia. Springer, Tokyo, pp 161–170CrossRef
      1. Hattori T, Sotome K (2013) Type studies of the polypores described by E.J.H. Corner from Asia and West Pacific areas VIII. Species described in Trametes (2). Mycoscience 54:297–308CrossRef
      2. Hattori T, Rashid NMN, Ujang S (2007) Basidiomycota: diversity of Malaysian polypores. In: Jones EBG, Hyde KD, Vikineswary S (eds) Malaysian fungal diversity. Mushroom Research Centre, University of Malaya and Ministry of Natural Resources and Environment, Malaysia, pp 55–68
      3. Hattori T, Yamashita S, Lee SS (2012) Diversity and conservation of wood-inhabiting polypores and other aphyllophoraceous fungi in Malaysia. Biodivers Conserv 21:2375–2396CrossRef
      4. Hawksworth DL (2012) Global species numbers of fungi: are tropical studies and molecular approaches contributing to a more robust estimate? Biodivers Conserv 21:2425–2433CrossRef
      5. Kato M, Inoue T, Hamid AA, Nagamitsu T, Merdek MB, Nona AR, Itino T, Yamane S, Yumoto T (1995) Seasonality and vertical structure of light-attracted insect communities in a dipterocarp forest in Sarawak. Res Popul Ecol 37:59–79CrossRef
      6. Kubartová A, Ottosson E, Dahlberg A, Stenlid J (2012) Patterns of fungal communities among and within decaying logs, revealed by 454 sequencing. Mol Ecol 21:4514–4532PubMedCrossRef
      7. Kumagai T, Yoshifuji N, Tanaka N, Suzuki M, Kume T (2009) Comparison of soil moisture dynamics between a tropical rain forest and a tropical seasonal forest in Southeast Asia: impact of seasonal and year-to-year variations in rainfall. Water Resour Res 45:W04413
      8. Lee SS, Alias SA, Jones EGB, Zainuddin N, Chan HT (2012) Checklist of fungi of Malaysia. Forest Research Institute Malaysia, Kepong, p 409
      9. Lindblad I (2000) Host specificity of some wood-inhabiting fungi in a tropical forest. Mycologia 92:399–405CrossRef
      10. Lodge DJ, Cantrell S (1995) Fungal communities in wet tropical forests: variation in time and space. Can J Bot 73(Suppl. 1):S1391–S1398CrossRef
      11. Magurran AE (2003) Measuring biological diversity. Blackwell, Oxford, p 256
      12. Mattson KG, Swank WT, Waide JB (1987) Decomposition of woody debris in a regenerating, clear-cut forest in the Southern Appalachians. Can J For Res 17:712–721CrossRef
      1. Noguchi S, Nik AR, Tani M (2003) Rainfall characteristics of tropical rainforest at Pasoh Forest Reserve, Negeri Sembilan, Peninsular Malaysia. In: Okuda T, Manokaran N, Matsumoto Y, Niiyama K, Thomas SC, Ashton PS (eds) Pasoh: ecology of a lowland rain forest in Southeast Asia. Springer, Tokyo, pp 51–58CrossRef
      2. Novotny V, Drozd P, Miller SE, Kulfan M, Janda M, Basset Y, Weiblen GD (2006) Why are there so many species of herbivorous insects in tropical rainforests? Science 313:1115–1118PubMedCrossRef
      3. Okuda T, Suzuki M, Adachi N, Yoshida K, Niijyama K, Noor NSM, Hussein NA, Manokaran N, Hashim M (2003) Logging history and its impact on forest structure and species composition in the Pasoh Forest Reserve: implications for the sustainable management of natural resources and landscapes. In: Okuda T, Manokaran N, Matsumoto Y, Niiyama K, Thomas SC, Ashton PS (eds) Pasoh: ecology of a lowland rain forest in Southeast Asia. Springer, Tokyo, pp 15–34CrossRef
      4. Ovaskainen O, Schigel D, Ali-Kovero H, Auvinen P, Paulin L, Norden B, Norden J (2013) Combining high-throughput sequencing with fruit body surveys reveals contrasting life-history strategies in fungi. ISME J 7:1696–1709PubMedCentralPubMedCrossRef
      5. Piepenbring M, Hofmann TA, Unterseher M, Kost G (2012) Species richness of plants and fungi in western Panama: towards a fungal inventory in the tropics. Biodivers Conserv 21:2181–2193CrossRef
      6. R Core Team (2013) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://​www.​R-project.​org/​. Accessed 21 July 2013
      7. Ryvarden L, Johansen I (1980) A preliminary polypore flora of East Africa. Fungiflora, Oslo, p 636
      8. Schmit JP, Mueller GM (2007) An estimate of the lower limit of global fungal diversity. Biodivers Conserv 16:99–111CrossRef
      1. Sodhi NS, Koh LP, Brook BW, Ng PKL (2004) Southeast Asian biodiversity: an impending disaster. Trends Ecol Evol 19:654–660PubMedCrossRef
      2. Stokland JN, Siitonen J, Jonsson BG (2012) Biodiversity in dead wood. Cambridge University Press, Cambridge, p 509CrossRef
      3. Unterseher M, Tal O (2006) Influence of small scale conditions on the diversity of wood decay fungi in a temperate, mixed deciduous forest canopy. Mycol Res 110:169–178PubMedCrossRef
      4. Whitmore TC (1988) Tropical rain forests of the far east, 2nd edn. Clarendon Press, Oxford
      5. Woodall CW, Liknes GC (2008) Relationships between forest fine and coarse woody debris carbon stocks across latitudinal gradients in the United States as an indicator of climate change effects. Ecol Indic 8:686–690CrossRef
      6. Yamashita S, Hattori T, Momose K, Nakagawa M, Aiba M, Nakashizuka T (2008) Effects of forest use on aphyllophoraceous fungal community structure in Sarawak, Malaysia. Biotropica 40:354–362CrossRef
      7. Yamashita S, Hattori T, Ohkubo T, Nakashizuka T (2009) Spatial distribution of the basidiocarps of aphyllophoraceous fungi in a tropical rainforest on Borneo Island, Malaysia. Mycol Res 113:1200–1207PubMedCrossRef
      8. Yamashita S, Hattori T, Abe S, Goto H, Sato H (2014) Effect of improvement cutting on the community structure of aphyllophoraceous fungi on Okinawa Island. J For Res 19:143–153CrossRef
      9. Yumoto T, Nakashizuka T (2005) The canopy biology program in Sarawak: scope, methods, and merit. In: Roubik DW, Sakai S, Karim AAH (eds) Pollination ecology and the rain forest: Sarawak Studies. Springer, New York, pp 13–21CrossRef

    • For further details log on website :

    No comments:

    Post a Comment

    Advantages and Disadvantages of Fasting for Runners

    Author BY   ANDREA CESPEDES  Food is fuel, especially for serious runners who need a lot of energy. It may seem counterintuiti...