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Tuesday 22 March 2016

ORYZA SATIVA

Oryza sativa, commonly known as Asian rice, is the plant species most commonly referred to in English as rice. Oryza sativa is a grass with a genome consisting of 43Mb across 12 chromosomes. It is renowned for being easy to genetically modify, and is a model organism for cereal biology. 

Oryza sativa
Rice Plants (IRRI).jpg
Scientific classification
Kingdom:Plantae
(unranked):Angiosperms
(unranked):Monocots
(unranked):Commelinids
Order:Poales
Family:Poaceae
Genus:Oryza
Species:O. sativa
Binomial name
Oryza sativa
L.

Classification
Oryza sativa contains two major subspecies: the sticky, short-grained japonica or sinicavariety, and the nonsticky, long-grained indica variety. Japonica varieties are usually cultivated in dry fields, in temperate East Asia, upland areas of Southeast Asia, and high elevations in South Asia, while indica varieties are mainly lowland rices, grown mostly submerged, throughout tropical Asia. Rice occurs in a variety of colors, including: white, brown, black, purple and red rices. Black rice (also known as purple rice) is a range of rice types, some of which are glutinous rice. Varieties include Indonesian black rice and Thai jasmine black rice.
A third subspecies, which is broad-grained and thrives under tropical conditions, was identified based on morphology and initially called javanica, but is now known as tropical japonica. Examples of this variety include the medium-grain 'Tinawon' and 'Unoy' cultivars, which are grown in the high-elevation rice terraces of the Cordillera Mountains of northern Luzon, Philippines.
Glaszmann (1987) used isozymes to sort O. sativa into six groups: japonicaaromaticindicaausrayada, and ashina.
Garris et al. (2004) used simple sequence repeats to sort O. sativa into five groups: temperate japonicatropical japonica and aromatic comprise the japonica varieties, while indica and aus comprise the indica varieties.
Oryza sativa, inflorescence
Nomenclature and Taxonomy


Rice stem cross section magnified 400 times
O. sativa

Rice has been cultivated since ancient times and oryza is a classical Latin word for rice. Sativa means "cultivated".



A: Rice with chaff
B: Brown rice
C: Rice with germ
D: White rice with bran residue
E: Musenmai (Japanese:無洗米), "Polished and ready to boil rice", literally, non-wash rice
(1): Chaff.
(2):Bran
(3): Bran residue
(4): Cereal germ.
(5): Endosperm

List of the Cultivars


Rice grains collection of IRRI

History of Domestication and Cultivation
Origins
Debates on the origins of the domesticated rice are numerous. In 2011, genetic evidence shows that all forms of Asian rice, both indica and japonica, spring from a single domestication that occurred 8,200–13,500 years ago in China of the wild rice Oryza rufipogon. A 2012 study , through a map of rice genome variation, indicated that the domestication of rice occurred in the Pearl River, valley region of China. From East Asia, rice was spread to South and Southeast Asia. Before this research, the commonly accepted view, based on archaeological evidence, is that rice was first domesticated in the region of the Yangtze River, valley in China.
The precise date of the first domestication is unknown, but depending on the molecular clock estimate, the date is estimated to be 8,200 to 13,500 years ago. This is consistent with known archaeological data on the subject.



Aerial view of terrace, rice fields in Yuanyang, Yunnan Province, southern China.
An older theory, based on one chloroplas and two nuclear gene regions, Londo et al. (2006) had proposed that O. sativa rice was domesticated at least twice—indica in eastern India, Myanmar and Thailand and japonica in southern China and Vietnam, though they concede that archaeological and genetic evidence exist for a single domestication of rice in the lowlands of China.
Because the functional allele for nonshattering, the critical indicator of domestication in grains, as well as five other single-nucleotide polymorphisms is identical in both indica and japonica, Vaughan et al. (2008) determined a single domestication event for O. sativa happened in the region of the Yangtze River valley.
Continental East Asia
Rice appears to have been used by the early Neolithic populations of Lijiacun and Yunchanyan. Evidence of possible rice cultivation in China around 11,500 BP has been found, but whether the rice was indeed being cultivated, or instead was being gathered as wild rice is still questioned.
Zhao (1998) argues that collection of wild rice in the Late Pleistocene had, by 6400 BC, led to the use of primarily domesticated rice. Morphological studies of rice phytoliths from the Diaotonghuan archaeological site clearly show the transition from the collection of wild rice to the cultivation of domesticated rice. The large number of wild rice phytoliths at the Diaotonghuan level dating from 12,000–11,000 BP indicates that wild rice collection was part of the local means of subsistence. Changes in the morphology of Diaotonghuan phytoliths dating from 10,000–8,000 BP show that rice had by this time been domesticated. Analysis of Chinese rice residues from Pengtoushan, which were carbon 14 dated to 8200–7800 BCE, show that rice had been domesticated by this time.
In 1998, Crawford and Shen reported the earliest of 14 AMS or radiocarbon dates on rice from at least 9 Early to Middle Neolithic sites are no older than 7000 BC, that rice from the Hemudu and Luojiajiao sites indicates that rice domestication likely began before 5000 BC, but that most sites in China from which rice remains have been recovered are younger than 5000 BC.
South Asia
Wild Oryza rice appeared in the Belan and Ganges valley regions of northern India as early as 4530 BC and 5440 BC, respectively, although many believe it may have appeared earlier. The Encyclopædia Britannica—on the subject of the first certain cultivated rice—holds that:
Many cultures have evidence of early rice cultivation, including China, India, and the civilizations of Southeast Asia. However, the earliest archaeological evidence comes from central and eastern China and dates to 7000–5000 BC.
 
Paddy fields in the Indian state of Tamil Nadu.
Denis J. Murphy (2007) further details the spread of cultivated rice from India into Southeast Asia;
" Several wild cereals, including rice, grew in the Vindhyan Hills, and rice cultivation, at sites such as Chopani-Mando and Mahagara, may have been underway as early as 7000 BP. The relative isolation of this area and the early development of rice farming imply that it was developed indigenously.
Chopani-Mando and Mahagara are located on the upper reaches of the Ganges, drainage system, and it is likely that migrants from this area spread rice farming down the Ganges valley into the fertile plains of Bengal, and beyond into south-east Asia".
Rice was cultivated in the Indus Valley civilization. Agricultural activity during the second millennium BC included rice cultivation in the Kashmir and Harrappan regions Mixed farming was the basis of Indus valley economy.
According to Zohary and Hopf (2000, p. 91), O. sativa was recovered from a grave at Susa in Iran (dated to the first century AD) at one end of the ancient world, while at the same time rice was grown in the Po valley in Italy. In northern Iran, in Gilan province, many indica rice cultivars including 'Gerdeh', 'Hashemi', 'Hasani', and 'Gharib' have been bred by farmers.
Korean Peninsular and JapaneseArchipelago
Mainstream archaeological evidence derived from palaeoethnobotanical investigations indicate dry-land rice was introduced to Korea and Japan sometime between 3500 and 1200 BC. The cultivation of rice then occurred on a small scale, fields were impermanent plots, and evidence shows that in some cases domesticated and wild grains were planted together. The technological, subsistence, and social impact of rice and grain cultivation is not evident in archaeological data until after 1500 BC. For example, intensive wet-paddy rice agriculture was introduced into Korea shortly before or during the Middle Mumun pottery period (circa 850–550 BC) and reached Japan by the final Jōmon or initial Yayoi periods circa 300 BC.
In 2003, Korean archaeologists alleged they discovered burnt grains of domesticated rice in Soro-ri, Korea, which dated to 13,000 BC. These antedate the oldest grains in China, which were dated to 10,000 BC, and potentially challenge the mainstream explanation that domesticated rice originated in China. The findings were received by academia with strong skepticism, and the results and their publicizing has been cited as being driven by a combination of nationalist and regional interests.
Southeast Asia


Using water buffalo to plough rice fields in Java; Indonesia is the world's third-largest paddy rice producer, and its cultivation has transformed much of the country's landscape.

Rice is the staple for all classes in contemporary Southeast Asia, from Myanmar to Indonesia. In Indonesia, evidence of wild Oryza rice on the island of Sulawesi dates from 3000 BCE. The evidence for the earliest cultivation, however, comes from eighth-century stone inscriptions from Java, which show kings levied taxes in rice. Divisions of labor between men, women, and animals that are still in place in Indonesian rice cultivation, can be seen carved into the ninth-century Prambanan temples in Central Java. In the 16th century, Europeans visiting the Indonesian islands saw rice as a new prestige food served to the aristocracy during ceremonies and feasts. Rice production in Indonesian history is linked to the development of iron tools and the domestication of water buffalo for cultivation of fields and manure for fertilizer. Once covered in dense forest, much of the Indonesian landscape has been gradually cleared for permanent fields and settlements as rice cultivation developed over the last 1500 years.


Traditional medicinal rice of Niyamgiri Hills, India
In the Philippines, the greatest evidence of rice cultivation since ancient times can be found in the Cordillera Mountain Range of Luzon in the provinces of Apayao, Benguet, Mountain Province and Ifugao. The Banaue Rice Terraces (Tagalog: Hagdan-hagdang Palayan ng Banaue) are 2,000- to 3,000-year-old terraces that were carved into the mountains by ancestors of the Batad indigenous people. The terraces are commonly thought to have been built with minimal equipment, largely by hand. The terraces are located about 1,500 m (5,000 ft) above sea level and cover 10,360 km2 (about 4,000 mi2) of mountainside. They are fed by an ancient irrigation system from the rainforests above the terraces.
Medicinal rice of Chhattisgarh used as immune booster
Evidence of wet-rice cultivation as early as 2200 BC has been discovered at both Ban Chiang and Ban Prasat in Thailand.
By the 19th century, encroaching European expansionism in the area increased rice production in much of Southeast Asia, and Thailand, then known as Siam. British Burma became the world's largest exporter of rice, from the turn of the 20th century to the 1970s, when neighbouring Thailand exceeded Burma. In recent years, Vietnam has been a strong exporter, as well, occasionally eclipsing Thailand. While China, India, and Indonesia remain the top rice producers, they are also some of the top rice consumers.
References

  1. ^ Oka (1988)
  2. ^ CECAP, PhilRice and IIRR. 2000. "Highland Rice Production in the Philippine Cordillera."
  3. ^ Glaszmann, J. C. (2004). "Isozymes and classification of Asian rice varieties". Theoretical and Applied Genetics.
  4. ^ Garris; Tai, TH; Coburn, J; Kresovich, S; McCouch, S; et al. (2004). "Genetic structure and diversity in Oryza sativa L. Genetics 169 (3): 1631–8. doi:10.1534/genetics.104.035642. PMC 144954. PMID 15654106.
  5. ^ Molina, J.; Sikora, M.; Garud, N.; Flowers, J. M.; Rubinstein, S.; Reynolds, A.; Huang, P.; Jackson, S.; Schaal, B. A.; Bustamante, C. D.; Boyko, A. R.; Purugganan, M. D. (2011). "Molecular evidence for a single evolutionary origin of domesticated rice". Proceedings of the National Academy of Sciences 108 (20): 8351. doi:10.1073/pnas.1104686108.
  6. ^ Huang, Xuehui; Kurata, Nori; Wei, Xinghua; Wang, Zi-Xuan; Wang, Ahong; Zhao, Qiang; Zhao, Yan; Liu, Kunyan; et al. (2012). "A map of rice genome variation reveals the origin of cultivated rice". Nature 490 (7421): 497–501. doi:10.1038/nature11532. PMID 23034647.
  7. ^ Normile, Dennis (1997). "Yangtze seen as earliest rice site". Science 275 (5298): 309–310. doi:10.1126/science.275.5298.309.
  8. ^ Vaughan, DA; Lu, B; Tomooka, N (2008). "The evolving story of rice evolution". Plant Science 174 (4): 394–408. doi:10.1016/j.plantsci.2008.01.016.
  9. ^ Harris, David R. (1996). The Origins and Spread of Agriculture and Pastoralism in Eurasia. Psychology Press. p. 565. ISBN 1-85728-538-7.
  10. ^ http://www.pnas.org/content/early/2011/04/27/1104686108.short.

- Wikipedia 

DEEPWATER RICE

Deepwater rice are varieties of rice (Oryza sativa) grown in flooded conditions with water more than 50 cm (20 in) deep for at least a month. More than 100 million people in South and Southeast Asia rely on deepwater rice for their sustenance. There are two adaptations which permit the rice to thrive in deeper water, floating rice and traditional talls. Traditional talls are varieties that are grown at water depths of between 50 cm (20 in) and 100 cm (39 in) and have developed to be taller and have longer leaves than standard rice. Floating rice grows in water deeper than 100 cm (39 in) through advanced elongation ability. This means when a field where rice is growing floods, accelerated growth in the internodal of the stem allows the plant to keep some of its foliage on top of the water. The Indica cultivar is the main type of deepwater rice, although varieties of Japonica have been found in Burma, Bangladesh and India.


A farmer inspecting a crop of deepwater rice
Production
Deepwater rice is a staple food that is grown on around 90,000 km2 (35,000 sq mi) of land. The main areas where it is grown are in South and Southeast Asia where more than 100 million people rely its production for their livelihood. In South Asia the main area deepwater rice is grown in is the Ganges Brahmaputra basin in India and Bangladesh. In Southeast Asia the main areas of cultivation are in Burma in the Irrawaddy Delta, in Thailand in the Chao Phraya  and Mekong in Vietnam and Cambodia. In these countries deepwater rice account for more than 25% of the land used to grow rice.
Deepwater rice is cultivated less in West Africa than in Asia with approximately 4,700 km2(1,800 sq mi). Areas it is grown include the Niger River basin. Some areas in Ecuador grow deepwater rice.
Cultivation Methods

Deepwater rice is grown in tropical monsoon climates normally around river deltas and their floodplains mainly in backswamps and natural levees. The nature of the flood is important for success of deepwater rice, with timing and the rate of rise of water affecting survival and crop density. Generally, the flood water comes from rainfall or rises in the water table. In places with low rainfall, water overspilling from rivers can flood rice producing areas.

Issues
When seeds are sown directly into the ground the seeds and young plants can be damaged by drought conditions before floods arrive. During this stage the plants can also suffer due to competition from weeds. Sudden flooding, where a large volume of water enters the field in a short time, can lead to a high level of seedling death.
Floating rice faces additional problems due to the depth and time of the water it grows in. Water conditions such as turbulence and temperature can adversely affect the crop.
Natural disasters can also damage or destroy deepwater rice crops. Tropical cyclones are particularly a problem in Asia. For example, in 2008 Cyclone Nargis damaged 122,782 hectares of deepwater rice in Burma. If predicted sea level rises due to climate change happen, this would affect the pattern of flooding, causing deeper floods over a wider area and eroding the coast.
Characteristics
Deepwater rice is rice grown in flooded conditions with water more than 50 cm (20 in) deep for at least a month. Rice has adapted to deep water in two ways known as traditional talls and floating rice. Traditional talls are varieties that are grown at water depths of between 50 cm (20 in) and 100 cm (39 in) and have developed to be taller and have longer leaves than standard rice. Floating rice grows in water deeper than 100 cm (39 in) through advanced elongation ability. When submerged this allows it to grow as fast as 25 cm (9.8 in) a day to reach a length of up to 7 m (23 ft) and survive in water as deep as 4 m (13 ft).
The Indica cultivar is the main type of deepwater rice, although varieties of Japonica have been found in Burma, Bangladesh and India. Deepwater rice emits the least methane, a greenhouse gas, of the wetland rice ecologies, producing approximately three times less than paddy field rice.
Floating Rice Adaptation
Floating rice is planted in dry ground and allowed to establish as young plants. The area becomes flooded which triggers the rice's elongation ability. This means when a field where rice is growing floods, accelerated growth in the internodes of the stem allows the plant to keep some of its foliage on top of the water. The stems are hollow and this allows gas to be exchanged between the plant and the atmosphere. Once the flooding ends the plant is left lying on the ground. The nodes at the top of the plant then start growing upwards towards due to gravitropic sensitivity.
Researchers checking on floating rice
The elongation is triggered when the plant is submerged through a mechanism involving ethylene gas. Ethylene is normally produced by plants and diffused into the air but when floating rice is submerged in water this process is disrupted as the gas moves more slowly into water. This leads to a buildup of ethylene in the plant. This triggers the production of a hormone called gibberellin which causes the rapid growth in the plant. When the plant reaches the surface the ethylene gas can escape as normal and the rapid growth stops. Research continues to enhance the ability to cope with increasing water depth. Rice will drown if submerged for too long.
New Cultivars
A recent cultivar named Swarna Sub1 was developed via marker-assisted selection, with the ability to withstand prolonged periods of around 14 days beneath a flooded plain. The submergence tolerance ability of this variety is conferred by the presence of the Sub1A gene, introgressed from the Indian cultivar FR13A into the flood-vulnerable (but high yielding) cultivar Swarna.
Swarna Sub1 effectively enters a dormant, energy-conserving state upon being submerged in a flooded rice paddy, a process that involves the finely controlled metabolism of enzymes such amylases, starch phosphorylase and alcohol dehydrogenase, allowing the plant to survive with limited oxygen and sunlight unlike its standard variety relatives. Given that the presence of the Sub1A gene does not impact upon the quality or quantity of the rice obtained, this variety has been very popular, with 1.7 million hectares of land in India having Swarna Sub1 and other flood-resistant varieties used instead of conventional rice crops.
References

  1. a b Catling, p. 2.
  2. a b c Bhuiyan, Sadiq I. (2004). Rice research and development in the flood-prone ecosystem. Int. Rice Res. Inst. p. v. ISBN 978-971-22-0197-4.
  3. a b c d Hans, Kende; Esther van der Knaap; Hyung-Taeg Cho (1998). "Deepwater Rice: A Model Plant to Study Stem Elongation. Michigan State University-Department of Energy Plant Research Laboratory. Retrieved 3 March 2011.
  4. a b Catling, p. 110.
  5. ^ "Production of rice and associated crops in deeply flooded areas of the Chao Phraya delta".(PDF). Retrieved 4 January 2013.
  6. a b Catling, p. 7.
  7. ^ Prein, Mark; Madan M. Dey (2006). "Community-based fish Culture in Seasonal Floodplains" Penang, Malaysia: WorldFish Center. Retrieved 7 March 2011.
  8. a b De Datta, p. 244.
  9. ^ De Datta, p. 249.
  10. ^ "Water Buffaloes Needed in Cyclone-hit Burma, Says FAO. The Irrawaddy. June 19, 2008. Retrieved 3 March 2011.
  11. a b Fountain, Henry (August 21, 2009). "In Some Rice Varieties, Genes Fuel Fast Growth When the Water Pours In. The New York Times.Retrieved 3 March 2011.
  12. ^ Yoko Hattori, Yoko; Keisuke Nagai1, Keisuke; Shizuka Furukawa1, Shizuka; Xian-Jun Song, Xian-Jun; Ritsuko Kawano, Ritsuko; Hitoshi Sakakibara, Hitoshi; Jianzhong Wu, Jianzhong; Takashi Matsumoto, Takashi; Atsushi Yoshimura, Hidemi Kitano, Makoto Matsuoka, Hitoshi Mori & Motoyuki Ashikar, Atsushi; Kitano, Hidemi; Matsuoka, Makoto; Mori, Hitoshi; Ashikari, Motoyuki (20 August 2009). "The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water. Nature 460 (7258): 1026–1030. doi:10.1038/nature08258.PMID 19693083.Retrieved March 17, 2013Received 23 April 2009; Accepted 30 June 2009
  13. ^ Abano, Imelda V. (December 5, 2008). "Waterproof rice passes international field tests". SciDev.Net. Archived from the original on 2013-03-17. Retrieved March 17, 2013A new type of rice that can survive total submersion for more than two weeks has passed its field tests with "flying colours," say researchers, and is now close to official release.
  14. a b c d Debrata, P.; Sarkar, R.K. (2012). "Role of Non-Structural Carbohydrate and its Catabolism Associated with Sub 1 QTL in Rice Subjected to Complete Submergence". Experimental Agriculture 48: 502–512.
  15. a b c "Climate change-ready rice" International Rice Research Institute (IRRI). Retrieved October 31, 2013. Archived January 1, 1970, at the Wayback Machine.
  16. ^ "Best minds meet to help crops survive flooding" International Rice Research Institute (IRRI) (2013). Retrieved October 31, 2013.

Bibliography

  • Catling, David (1992). Rice in Deep Water. Int. Rice Res. Inst.book. ISBN 978-971-22-0005-2.
  • De Datta, Surajit K. (1981). Principles and Practices of Rice Production.Int. Rice Res. Inst. ISBN 978-0-471-09760-0.


- Wikipedia 

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