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Thursday, 8 December 2016

Marker-assisted breeding of the rice restorer line Wanhui 6725 for disease resistance, submergence tolerance and aromatic fragrance

Published Date
9:66

Open AccessOriginal article
DOI: 10.1186/s12284-016-0139-9

Cite this article as: 
Luo, Y., Ma, T., Zhang, A. et al. Rice (2016) 9: 66. doi:10.1186/s12284-016-0139-9

Author
  • Yanchang Luo
  • Tingchen Ma
  • Aifang Zhang
  • Kar Hui Ong
  • Zefu Li
  • Jianbo Yang
  • Zhongchao Yin
Abstract

Background 

Rice is a staple food crop in the world. With the increase in world population and economic development, farmers need to produce more rice in limited field. However, the rice production is frequently affected by biotic and abiotic stresses. The use of natural disease resistance and stress tolerance through genetic breeding is the most efficient and economical way to combat or acclimate to these stresses. In addition, rice with aromatic fragrance can significantly increase market value for its good grain quality. Mianhui 725 (MH725) is an elite restorer line that has been widely used to produce three-line hybrid rice in China. We previously introduced rice bacterial blight resistance genes Xa4 and Xa21 into MH725 and obtained an introgression rice line Wanhui 421 (WH421), which theoretically possesses 96.9% genetic background of MH725.

Results

Here we report the introduction and pyramiding of disease resistance genes Xa27 and Pi9, submergence tolerance gene Sub1A and aromatic fragrance gene badh2.1 in WH421 through backcrossing and marker-assisted selection. The newly developed introgression rice line was designated as Wanhui 6725 (WH6725), which theoretically possesses 95.0% genetic background of MH725. WH6725 and its hybrid rice conferred disease resistance to both blast and bacterial blight diseases and showed tolerance to submergence for over 14 days without significant loss of viability. Compared with non-aromatic rice MH725, WH6725 has strong aromatic fragrance. The major important agronomic traits and grain quality of WH6725 and its hybrid rice obtained in field trials were similar to those of MH725 and the control hybrid rice, indicating that WH6725 is as good as MH725 when it is used as a restorer line for three-line hybrid rice production.

Conclusion

We have successfully developed a new restorer line WH6725 with disease resistance to rice blast and bacterial blight, tolerance to submergence and aromatic fragrance, which can be used to replace MH725 for hybrid rice production.

Keywords

badh2.1Pi9Sub1AXa4Xa21Xa27Mianhui 725Wanhui 6725Marker-assisted selection

Abbreviations

BADH2
Betaine aldehyde dehydrogenase gene
CMS
Cytoplasmic male sterile
MAS
Marker-assisted selection
MH725
Mianhui 725
PCR
Polymerase chain reaction
R
Resistance gene
STS
Sequence-tagged site
TGMS
Thermosensitive-genic male sterility
WH421
Wanhui 421
WH6725
Wanhui 6725.

References
  1. Amante-Bordeos A, Sitch LA, Nelson R, Dalmacio RD, Oliva NP, Aswidinnoor H, Leung H (1992) Transfer of bacterial blight and blast resistance from the tetraploid wild rice Oryza minuta to cultivated rice, Oryza sativa. Theor Appl Genet 84:345–354PubMedGoogle Scholar
  2. Blair MW, McCouch SR (1997) Microsatellite and sequence-tagged site markers diagnostic for the rice bacterial leaf blight resistance gene xa-5. Theor Appl Genet 95:174–184CrossRefGoogle Scholar
  3. Bradbury LM, Fitzgerald TL, Henry RJ, Jin Q, Waters DL (2005) The gene for fragrance in rice. Plant Biotechnol J 3:363–370CrossRefPubMedGoogle Scholar
  4. Chen S, Lin X, Xu C, Zhang Q (2000) Improvement of bacterial blight resistance of ‘Minghui 63’, an elite restorer line of hybrid rice, by molecular marker-assisted selection. Crop Sci 40:239–244CrossRefGoogle Scholar
  5. Cruz ND, Khush GS (2000) Rice grain quality evaluation procedures. In: Singh RK, Singh US, Khush GS (eds) Aromatic rices. Oxford and IBH Publishing Co. Pvt. Ltd, New Delhi, pp 24–36Google Scholar
  6. Cruz CMV, Bai J, Oña I, Leung H, Nelson RJ, Mew T-W, Leach JE (2000) Predicting durability of a disease resistance gene based on an assessment of the fitness loss and epidemiological consequences of avirulence gene mutation. Proc Natl Acad Sci U S A 97:13500–13505CrossRefGoogle Scholar
  7. Datta K, Baisakh N, Thet KM, Tu J, Datta SK (2002) Pyramiding transgenes for multiple resistance in rice against bacterial blight, yellow stem borer and sheath blight. Theor Appl Genet 106:1–8CrossRefPubMedGoogle Scholar
  8. Duncan DB (1955) Multiple range and multiple F tests. Biometrics 11:1–42CrossRefGoogle Scholar
  9. Fukao T, Yeung E, Bailey-Serres J (2011) The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice. Plant Cell 23:412–427CrossRefPubMedGoogle Scholar
  10. Gnanamanickam S, Priyadarisini VB, Narayanan N, Vasudevan P, Kavitha S (1999) An overview of bacterial blight disease of rice and strategies for its management. Curr Sci 77:1435–1444Google Scholar
  11. Gu K, Tian D, Yang F, Wu L, Sreekala C, Wang D, Wang GL, Yin Z (2004) High-resolution genetic mapping of Xa27 (t), a new bacterial blight resistance gene in rice, Oryza sativa L. Theor Appl Genet 108:800–807CrossRefPubMedGoogle Scholar
  12. Gu K, Yang B, Tian D, Wu L, Wang D, Sreekala C, Yang F, Chu Z, Wang G-L, White FF (2005) R gene expression induced by a type-III effector triggers disease resistance in rice. Nature 435:1122–1125CrossRefPubMedGoogle Scholar
  13. Huang N, Angeles ER, Domingo J, Magpantay G, Singh S, Zhang G, Kumaravadivel N, Bennett J, Khush GS (1997) Pyramiding of bacterial blight resistance genes in rice: marker-assisted selection using RFLP and PCR. Theor Appl Genet 95:313–320CrossRefGoogle Scholar
  14. Ikeda R, Khush G, Tabien R (1990) A new resistance gene to bacterial blight derived from O. longistaminata. Jpn J Breed 40:280–281Google Scholar
  15. Kauffman H, Reddy A, Hsieh S, Merca S (1973) An improved technique for evaluating resistance of rice varieties to Xanthomonas oryzae. Plant Dis Rep 57:537–541Google Scholar
  16. Kaundal R, Kapoor AS, Raghava GP (2006) Machine learning techniques in disease forecasting: a case study on rice blast prediction. BMC Bioinformatics 7:485CrossRefPubMedPubMedCentralGoogle Scholar
  17. Khanna A, Sharma V, Ellur RK, Shikari AB, Gopala Krishnan S, Singh UD, Prakash G, Sharma TR, Rathour R, Variar M, Prashanthi SK, Nagarajan M, Vinod KK, Bhowmick PK, Singh NK, Prabhu KV, Singh BD, Singh AK (2015) Development and evaluation of near-isogenic lines for major blast resistance gene(s) in Basmati rice. Theor Appl Genet 128:1243–1259CrossRefPubMedGoogle Scholar
  18. Koide Y, Ebron LA, Kato H, Tsunematsu H, Telebanco-Yanoria MJ, Kobayashi N, Yokoo M, Maruyama S, Imbe T, Fukuta Y (2011) A set of near-isogenic lines for blast resistance genes with an Indica-type rainfed lowland elite rice (Oryza sativa L.) genetic background. Field Crop Res 123:19–27CrossRefGoogle Scholar
  19. Kottapalli KR, Narasu ML, Jena KK (2010) Effective strategy for pyramiding three bacterial blight resistance genes into fine grain rice cultivar, Samba Mahsuri, using sequence tagged site markers. Biotechnol Lett 32:989–996CrossRefPubMedGoogle Scholar
  20. Kovach MJ, Calingacion MN, Fitzgerald MA, McCouch SR (2009) The origin and evolution of fragrance in rice (Oryza sativa L.). Proc Natl Acad Sci U S A 106:14444–14449CrossRefPubMedPubMedCentralGoogle Scholar
  21. Liu G, Lu G, Zeng L, Wang GL (2002) Two broad-spectrum blast resistance genes, Pi9(t) and Pi2(t), are physically linked on rice chromosome 6. Mol Genet Genomics 267:472–480CrossRefPubMedGoogle Scholar
  22. Liu W, Liu J, Triplett L, Leach JE, Wang G-L (2014) Novel insights into rice innate immunity against bacterial and fungal pathogens. Annu Rev Phytopathol 52:213–241CrossRefPubMedGoogle Scholar
  23. Luo Y, Yin Z (2013) Marker-assisted breeding of Thai fragrance rice for semi-dwarf phenotype, submergence tolerance and disease resistance to rice blast and bacterial blight. Mol Breed 32:709-721
  24. Luo Y, Sangha J, Wang S, Li Z, Yang J, Yin Z (2012) Marker-assisted breeding of Xa4Xa21and Xa27 in the restorer lines of hybrid rice for broad-spectrum and enhanced disease resistance to bacterial blight. Mol Breed 30:1601–1610CrossRefGoogle Scholar
  25. Luo Y, Zakaria S, Basyah B, Ma T, Li Z, Yang J, Yin Z (2014) Marker-assisted breeding of Indonesia local rice variety Siputeh for semi-dwarf phonetype, good grain quality and disease resistance to bacterial blight. Rice (N Y) 7:33Google Scholar
  26. Mew T, Alvarez A, Leach J, Swings J (1993) Focus on bacterial blight of rice. Plant Dis Rep 77:5–12CrossRefGoogle Scholar
  27. Neeraja CN, Maghirang-Rodriguez R, Pamplona A, Heuer S, Collard BC, Septiningsih EM, Vergara G, Sanchez D, Xu K, Ismail AM, Mackill DJ (2007) A marker-assisted backcross approach for developing submergence-tolerant rice cultivars. Theor Appl Genet 115:767–776
  28. Ni D, Song F, Ni J, Zhang A, Wang C, Zhao K, Yang Y, Wei P, Yang J, Li L (2015) Marker-assisted selection of two-line hybrid rice for disease resistance to rice blast and bacterial blight. Field Crop Res 184:1–8CrossRefGoogle Scholar
  29. Peng T, Sun X, Mumm RH (2014a) Optimized breeding strategies for multiple trait integration: I. Minimizing linkage drag in single event introgression. Mol Breed 33:89–104CrossRefPubMedGoogle Scholar
  30. Peng T, Sun X, Mumm RH (2014b) Optimized breeding strategies for multiple trait integration: II. Process efficiency in event pyramiding and trait fixation. Mol Breed 33:105–115CrossRefPubMedGoogle Scholar
  31. Perez LM, Redona ED, Mendioro MS, Cruz CMV, Leung H (2008) Introgression of Xa4Xa7and Xa21 for resistance to bacterial blight in thermosensitive genetic male sterile rice (Oryza sativa L.) for the development of two-line hybrids. Euphytica 164:627–636CrossRefGoogle Scholar
  32. Rajpurohit D, Kumar R, Kumar M, Paul P, Awasthi A, Basha PO, Puri A, Jhang T, Singh K, Dhaliwal HS (2011) Pyramiding of two bacterial blight resistance and a semidwarfing gene in Type 3 Basmati using marker-assisted selection. Euphytica 178:111–126CrossRefGoogle Scholar
  33. Sarkarung S, Somrith B, Chitrakorn S (2000) Aromatic rice of Thailand. In: Singh R, Singh U, Khush G (eds) Aromatic rices. Oxford and IBH Publishing Co. Pvt. Ltd, New Delhi, Calcutta, pp 180–183Google Scholar
  34. Singh S, Sidhu JS, Huang N, Vikal Y, Li Z, Brar DS, Dhaliwal HS, Khush GS (2001) Pyramiding three bacterial blight resistance genes (xa5xa13 and Xa21) using marker-assisted selection into indica rice cultivar PR106. Theor Appl Genet 102:1011–1015CrossRefGoogle Scholar
  35. Somrith B (1996) Khao Dawk Mali 105: Problems, research efforts and future prospects. Report of the INGER Monitoring Visit on Fine-Grain Aromatic Rice in India, Iran, Pakistan and Thailand. IRRI, Manila, pp 102–111Google Scholar
  36. Song W-Y, Wang G-L, Chen L-L, Kim H-S (1995) A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science 270:1804CrossRefPubMedGoogle Scholar
  37. Spielmeyer W, Ellis MH, Chandler PM (2002) Semidwarf (sd-1), “green revolution” rice, contains a defective gibberellin 20-oxidase gene. Proc Natl Acad Sci U S A 99:9043–9048CrossRefPubMedPubMedCentralGoogle Scholar
  38. Sun X, Mumm RH (2015) Optimized breeding strategies for multiple trait integration: III. Parameters for success in version testing. Mol Breed 35:201CrossRefPubMedPubMedCentralGoogle Scholar
  39. Sun X, Yang Z, Wang S, Zhang Q (2003) Identification of a 47-kb DNA fragment containing Xa4, a locus for bacterial blight resistance in rice. Theor Appl Genet 106:683–687CrossRefPubMedGoogle Scholar
  40. Wang Q, He G (2007) Genetic divergence between rice germplasms of blast resistance and the major WA-CMS-type restorers. Mol Plant Breed 5:74–78Google Scholar
  41. Wang X, Jia MH, Ghai P, Lee FN, Jia Y (2015) Genome-wide association of rice blast disease resistance and yield-related components of rice. Mol Plant Microbe Interact 28:1383–1392CrossRefPubMedGoogle Scholar
  42. Xu KN, Mackill DJ (1996) A major locus for submergence tolerance mapped on rice chromosome 9. Mol Breed 2:219–224CrossRefGoogle Scholar
  43. Xu K, Xu X, Fukao T, Canlas P, Maghirang-Rodriguez R, Heuer S, Ismail AM, Bailey-Serres J, Ronald PC, Mackill DJ (2006) Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature 442:705–708CrossRefPubMedGoogle Scholar
  44. Yuan L, Yang Z, Yang J (1994) Hybrid rice in China. In: Virmani S (ed) Hybrid Rice Technology: New Developments and Future Prospects. International Rice Research Institute, Manila, pp 143–147Google Scholar
  45. Zhai WX, Wang WM, Zhou YL, Li XB, Zheng XW, Zhang Q, Wang GL, Zhu LH (2002) Breeding bacterial blight-resistant hybrid rice with the cloned bacterial blight resistance gene Xa21. Mol Breed 8:285–293CrossRefGoogle Scholar
  46. Zhang Q (2007) Strategies for developing Green Super Rice. Proc Natl Acad Sci U S A 104:16402–16409CrossRefPubMedPubMedCentralGoogle Scholar
  47. Zhang Q (2009) Genetics and improvement of bacterial blight resistance of hybrid rice in China. Rice Sci 16:83–92CrossRefGoogle Scholar
  48. Zhang J, Li X, Jiang G, Xu Y, He Y (2006) Pyramiding of Xa7 and Xa21 for the improvement of disease resistance to bacterial blight in hybrid rice. Plant Breed 125:600–605CrossRefGoogle Scholar
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http://link.springer.com/article/10.1186/s12284-016-0139-9

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