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Sunday, 4 September 2016

Molecular Phylogeny of Dipterocarpaceae

Author

  • Tadashi Kajita
  • Yoshihiko Tsumura

Abstract

The Dipterocarpaceae is distributed mainly in Southeast Asia and its species represent a major canopy component in tropical forests. In Southeast Asia’s tropical rain forests in paticular, the Dipterocarpaceae is one of the region’s most ecologically and economically significant tree families. The family displays extreme species richness in many tropical rain forests, including Pasoh Forest Reserve (Pasoh FR) — one of key tropical field ecological centres in the world. Dipterocarp species are abundant in the reserve and consequently represent major target species for the studies in this forest. In this paper, recent progress in molecular phylogenetics of Dipterocarpaceae is reviewed, with reference to representatives of all the genera found in the Pasoh FR. A familial relationship of Dipterocarpaceae, Sarcolaenaceae and Cistaceae was re-analyzed using maximum parsimony, neighbor joining, and maximum likelihood methods. A hypothetical phylogenetic tree of genera of Dipterocarpaceae combining all the published phylogenetic relationships is proposed.

References

  1. Alverson, W. S., Karol, K. G, Baum, D. A., Chase, M. W., Swensen, S. M., McCourt, R. & Sytsma, K. J. (1998) Circumscription of the Malvales and relationships to other Rosidae Evidence from rbcL sequence data. Am. J. Bot. 85: 876–887.PubMedCrossRef
  2. Ashton, P. S. (1982) Dipterocarpaceae. In Van Steenis, C. G. G. J. (ed). Flora Malesiana, Series 1, Spermatophyta, vol. 9, Martinus Nijhoff Pulishers, The Hague, pp.237–552.
  3. Ashton, P. S. (1988) Dipterocarp biology as a window to the understanding of tropical forest structure. Annu. Rev. Ecol. Syst. 19: 347–70.CrossRef
  4. Ashton, P. S., Gan, Y. Y. & Robertson, F. M. (1984) Electrophoretic and morphological comoparisons in ten rain forest species of Shorea (Dipterocarpaceae). Bot. J. Linn. Soc. 89: 293–304.CrossRef
  5. Bayer, C., Fay, M. F., De Bruijn, P. Y., Savolainen, V., Morton, C. M., Kubitzki, K., Alverson, W. S. & Chase, M. W. (1999) Support for an expanded family concept of Malvaceae within a recircumscribed order Malvales a combined analysis of plastid atpB and rbcL DNA sequences. Bot. J. Linn. Soc. 129: 267–303.
  6. Bessey, C. (1915) The phylogenetic taxonomy of flowering plants. Ann. Mo. Bot. Gard. 2: 109–164.CrossRef
  7. Bousquet, J., Strauss, S. H. & Li, P. (1992) Complete congruence between morphological and rbcL-based molecular phylogenies in birches and related species (Betulaceae). Mol. Biol. Evol. 9: 1076–1088.PubMed
  8. Chase, M. W., Soltis, D. E., Olmstead, R. G, Morgan, D., Les, D. H., Mishler, B. D., Duvall, M. R., Price, R. A., Hills, H. G, Qiu, Y. L., Kron, K. A., Rettig, J. H., Conti, E., Palmer, J. D., Manhart, J. R., Sytsma, K. J., Michaels, H. J., Kress, W. J., Karol, K. G, Clark, W. D., Hedrén, M., Gaut, B. S., Jansen, R. K., Kim, K. J., Wimpee, C. F., Smith, J. F., Furnier, G R., Strauss, S. H., Xiang, Q. Y., Plunkett, G M., Soltis, P. S., Swensen, S. M., Williams, S. E., Gadek, P. A., Quinn, C. J., Eguiarte, L. E., Golenberg, E., Learn, J. G. H., Graham, S. W., Barrett, S. C. H., Dayanandan, S. & Albert, V. A. (1993) Phylogenetics of seed plants: An analysis of nucleotide sequences from the plastid gene rbcL. Ann. Mo. Bot. Gard. 80: 528–580.CrossRef
  9. Cronquist, A. (1981) An Integrated System of Classification of Flowering Plants. Columbia University Press, New York.
  10. Dahlgren, R. (1983) General aspects of Angiosperm evolution and macrosystematics. Nord. J. Bot. 3: 119–149.CrossRef
  11. Dayanandan, S., Ashton, P. S., Williams, S. M. & Primack, R. B. (1999) Phylogeny of the tropical tree family Dipterocarpaceae based on nucleotide sequences of the chloroplast rbcL gene. Am. J. Bot. 86: 1182–1190.PubMedCrossRef
  12. Goldblatt, P. & Dorr, L. J. (1986) Chromosome number in Sarcolaenaceae. Ann. Mo. Bot. Gard. 73: 828–829.CrossRef
  13. Hutchinson, J. (1926) The Families of Flowering Plants. Macmillan, London.
  14. Ina, Y. (1994) ODEN: a program package for molecular evolutionary analysis and database search of DNA and amino acid sequences. CABIOS 10: 11–12.PubMed
  15. Jukes, T. H. & Cantor, C. R. (1969) Evolution of protein molecules. In Munro, H. N. (ed.) Mammalian Protein Metabolism, Academic Press, New York, pp.21–132.
  16. Kajita, T., Kamiya, K., Nakamura, K., Tachida, H., Wickneswari, R., Tsumura, Y., Yoshimaru, H. & Yamazaki, T. (1998) Molecular phylogeny of Diptrocarpaceae in Southeast Asia based on nucleotide sequences of matK, trnL intron, and trnL-tmF intergenic spacer region in chloroplast DNA. Mol. Phylogene. Evol. 10: 202–209.CrossRef
  17. Kamiya, K., Harada, K., Ogino, K., Kajita, K., Yamazaki, T., Lee, H. S. & Ashton, P. S. (1998) Molecular phylogeny of dipterocarp species using nucleotide sequences of two noncoding regions in chloroplast DNA. Tropics 7: 197–207.CrossRef
  18. Kostermans, A. J. G H. (1992) A handbook of the Dipterocarpaceae of Sri Lanka. Wildlife Heritage Trust of Sri Lanka, Colombo.
  19. Londono, A. C., Alvarez, E., Forero, E. & Morton, C. M. (1995) A new genus and species of Dipterocarpaceae from the Neotropics. I. Introduction, Taxonomy, ecology, and distribution. Brittonia 47: 225–236.CrossRef
  20. Morton, C. M., Dayanandan, S. & Dissanayake, D. (1999) Phylogeny and biosystematics of Pseudomonotes (Dipterocarpaceae) based on molecular and morphological data. Plant Syst. Evol. 216: 197–205.CrossRef
  21. Nandi, O. I. (1998) Ovule and seed anatomy of Cistaceae and related Malvanae. Plant Syst. Evol. 209: 239–264.CrossRef
  22. Nandi, O. I., Chase, M. W. & Endress, P. K. (1998) A combined cladistic analysis of Angiosperms using rbcL and non-molecular data sets. Ann. Mo. Bot. Gard. 85: 137–212.CrossRef
  23. Nei, M. & Gojobori, T. (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3: 418–426.PubMed
  24. Nei, M. & Jin, L. (1989) Variances of the average number of nucleotide substitutions within and between populations. Mol. Biol. Evol. 6: 290–300.PubMed
  25. Randrianasolo, A. & Miller, J. S. (1999) Taxonomic revision of the genus Sarcolaena (Sarcolaenaceae). Ann. Mo. Bot. Gard. 86: 702–722.CrossRef
  26. Soltis, D. E., Soltis, P. S., Nichent, D. L., Johnson, L.A., Hahn, W. J., Hoot, S. B., Sweere, J.A., Kuzoff, R. K., Kron, K. A., Chase, M. W., Swensen, S. M., Zimmer, E. A., Chaw, S. M., Gillespie, L. J., Kress, W. J. & Sytsma, K. J. (1997) Angiosperm phylogeny inferred from 18S ribosomal DNA sequences. Ann. Mo. Bot. Gard. 84: 1–49.CrossRef
  27. Strimmer, K. & Von Haeseler, A. (1996) Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13: 964–969.CrossRef
  28. Swofford, D. L. (1999) PAUP*. PhylogeneticAnalysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
  29. Symington, C. F. (1943) Foresters’Manual of Dipterocarps. Malayan Forest Records No. 16. University of Malaya Press, Kuala Lumpur (Reprinted with plates and historical introduction).
  30. Takhtajan, A. (1997) Diversity and Classification of Flowering Plants. Columbia University Press, New York.
  31. Thorne, R. F. (1992) An updated phylogenetic classification of the flowering plants. Aliso 13: 365–389.
  32. Tsumura, Y., Kawahara, T., Wickneswari, R. & Yoshimura, K. (1996) Molecular phylogeny of Dipterocarpaceae in Southeast Asia using RFLP of PCR-amplified chloroplast genes. Theor. Appl. Genet. 93: 22–29.CrossRef
  33. Wettstein, R. (1935) Handbuch der Systematischen Botanik. Leipzig.

For further details log on website :
http://link.springer.com/chapter/10.1007/978-4-431-67008-7_19

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